Publications
2024
The evolution of metastatic upper tract urothelial carcinoma through genomic-transcriptomic and single-cell protein markers analysis
Kentaro Ohara,
André Figueiredo Rendeiro,
Bhavneet Bhinder,
Kenneth Wha Eng,
Hiranmayi Ravichandran,
Duy Nguyen,
David Pisapia,
Aram Vosoughi,
Evan Fernandez,
Kyrillus S Shohdy,
Jyothi Manohar,
Shaham Beg,
David Wilkes,
Brian D Robinson,
Francesca Khani,
Rohan Bareja,
Scott T Tagawa,
Madhu M Ouseph,
Andrea Sboner,
Olivier Elemento,
Bishoy M Faltas,
Juan Miguel Mosquera.
Nat Commun. 2024 Mar 18;15(1):2009. doi: 10.1038/s41467-024-46320-w.
2024
Transcriptomic signatures of progressive and regressive liver fibrosis and portal hypertension
Oleksandr Petrenko,
Philipp Königshofer,
Ksenia Brusilovskaya,
Benedikt S Hofer,
Katharina Bareiner,
Benedikt Simbrunner,
Frank Jühling,
Thomas F Baumert,
Joachim Lupberger,
Michael Trauner,
Stefan G Kauschke,
Larissa Pfisterer,
Eric Simon,
André F Rendeiro,
Laura P M H de Rooij,
Philipp Schwabl,
Thomas Reiberger.
iScience. 2024 Feb 20;27(3):109301. doi: 10.1016/j.isci.2024.109301. eCollection 2024 Mar 15.
2024
Navigating the thymic landscape through development: from cellular atlas to tissue cartography
Dörte Symmank,
Felix Clemens Richter,
André F Rendeiro.
Genes Immun. 2024 Apr;25(2):102-104. doi: 10.1038/s41435-024-00257-8. Epub 2024 Feb 10.
2023
Mapping human natural killer cell development in pediatric tonsil by imaging mass cytometry and high-resolution microscopy
Everardo Hegewisch-Solloa,
Janine E Melsen,
Hiranmayi Ravichandran,
André F Rendeiro,
Aharon G Freud,
Bethany Mundy-Bosse,
Johannes C Melms,
Shira E Eisman,
Benjamin Izar,
Eli Grunstein,
Thomas J Connors,
Olivier Elemento,
Amir Horowitz,
Emily M Mace.
bioRxiv [Preprint]. 2023 Sep 6:2023.09.05.556371. doi: 10.1101/2023.09.05.556371.
2022
Spatial omics technologies at multimodal and single cell/subcellular level
Jiwoon Park,
Junbum Kim,
Tyler Lewy,
Charles M Rice,
Olivier Elemento,
André F Rendeiro,
Christopher E Mason.
Genome Biol. 2022 Dec 13;23(1):256. doi: 10.1186/s13059-022-02824-6.
2022
Persistent alveolar type 2 dysfunction and lung structural derangement in post-acute COVID-19
André F Rendeiro,
Hiranmayi Ravichandran,
Junbum Kim,
Alain C Borczuk,
Olivier Elemento,
Robert E Schwartz.
medRxiv. 2022 Nov 29:2022.11.28.22282811. doi: 10.1101/2022.11.28.22282811. Preprint.
2022
Author Correction: Unsupervised discovery of tissue architecture in multiplexed imaging
Junbum Kim,
Samir Rustam,
Juan Miguel Mosquera,
Scott H Randell,
Renat Shaykhiev,
André F Rendeiro,
Olivier Elemento.
Nat Methods. 2022 Dec;19(12):1662. doi: 10.1038/s41592-022-01717-7.
2022
Unsupervised discovery of tissue architecture in multiplexed imaging
Junbum Kim,
Samir Rustam,
Juan Miguel Mosquera,
Scott H Randell,
Renat Shaykhiev,
André F Rendeiro,
Olivier Elemento.
Nat Methods. 2022 Dec;19(12):1653-1661. doi: 10.1038/s41592-022-01657-2. Epub 2022 Oct 31.
2021
Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing.
Datlinger P,
Rendeiro AF,
Boenke T,
Senekowitsch M,
Krausgruber T,
Barreca D,
Bock C.
Nat Methods. 2021 Jun;18(6):635-642. doi: 10.1038/s41592-021-01153-z. Epub 2021 May 31.
2021
Hyperglycemia Induces Trained Immunity in Macrophages and Their Precursors and Promotes Atherosclerosis.
Edgar L,
Akbar N,
Braithwaite AT,
Krausgruber T,
Gallart-Ayala H,
Bailey J,
Corbin AL,
Khoyratty TE,
Chai JT,
Alkhalil M,
Rendeiro AF,
Ziberna K,
Arya R,
Cahill TJ,
Bock C,
Laurencikiene J,
Crabtree MJ,
Lemieux ME,
Riksen NP,
Netea MG,
Wheelock CE,
Channon KM,
Rydén M,
Udalova IA,
Carnicer R,
Choudhury RP.
Circulation. 2021 Sep 21;144(12):961-982. doi: 10.1161/CIRCULATIONAHA.120.046464. Epub 2021 Jul 13.
