Publications
2025
The metabolic organ connectome: A novel approach to measure allostatic load during health-to-disease transition
Barbara Katharina Geist,
Julia Guthrie,
Hunor Kertesz,
Florian W Kiefer,
Oana C Kulterer,
Thomas Nakuz,
Lukas Nics,
Eva-Maria Patronas,
Andre Rendeiro,
Chrysoula Vraka,
Josef Yu,
Stefan Grünert,
Marcus Hacker.
Med. 2025 Oct 14:100881. doi: 10.1016/j.medj.2025.100881. Online ahead of print.
2025
The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs
Jiwoon Park,
Roberto De Gregorio,
Erika Hissong,
Elif Ozcelik,
Nicholas Bartelo,
Felipe Segato Dezem,
Luke Zhang,
Maycon Marção,
Hannah Chasteen,
Yimin Zheng,
Ernesto Abila,
Junbum Kim,
Jacqueline Proszynski,
Akua A Agyemang,
Mohith Reddy Arikatla,
Arjumand Wani,
Yutian Liu,
Evelyn Metzger,
Stefan Rogers,
Prajan Divakar,
Parambir S Dulai,
Jason Reeves,
Yan Liang,
Liuliu Pan,
Sayani Bhattacharjee,
Michael Patrick,
Kimberly Young,
Ashley Heck,
Mithra Korukonda,
Dan McGuire,
Lidan Wu,
Aster Wardhani,
Joseph Beechem,
George Church,
Steven M Lipkin,
Sanjay Patel,
Fabio Socciarelli,
Rohit Chandwani,
Sebastien Monette,
Brian Robinson,
Massimo Loda,
Olivier Elemento,
Luciano Martelotto,
Jasmine Plummer,
André F Rendeiro,
Alicia Alonso,
Robert E Schwartz,
Shauna Lee Houlihan,
Christopher E Mason.
bioRxiv [Preprint]. 2025 Jun 19:2025.06.16.658716. doi: 10.1101/2025.06.16.658716.
2025
Simultaneous immunomodulation and epithelial-to-mesenchymal transition drives lung adenocarcinoma progression
Junbum Kim,
Hiranmayi Ravichandran,
Liron Yoffe,
Bhavneet Bhinder,
Kyle Finos,
Arshdeep Singh,
Bradley B Pua,
Stewart Bates,
Bevan Emma Huang,
Andre F Rendeiro,
Vivek Mittal,
Nasser K Altorki,
Timothy E McGraw,
Olivier Elemento.
bioRxiv [Preprint]. 2025 Feb 22:2025.02.19.637138. doi: 10.1101/2025.02.19.637138.
2025
Marsilea: an intuitive generalized paradigm for composable visualizations
Yimin Zheng,
Zhihang Zheng,
André F Rendeiro,
Edwin Cheung.
Genome Biol. 2025 Jan 6;26(1):5. doi: 10.1186/s13059-024-03469-3.
2024
Pooled multicolour tagging for visualizing subcellular protein dynamics
Andreas Reicher,
Jiří Reiniš,
Maria Ciobanu,
Pavel Růžička,
Monika Malik,
Marton Siklos,
Victoria Kartysh,
Tatjana Tomek,
Anna Koren,
André F Rendeiro,
Stefan Kubicek.
Nat Cell Biol. 2024 May;26(5):745-756. doi: 10.1038/s41556-024-01407-w. Epub 2024 Apr 19.
2024
The evolution of metastatic upper tract urothelial carcinoma through genomic-transcriptomic and single-cell protein markers analysis
Kentaro Ohara,
André Figueiredo Rendeiro,
Bhavneet Bhinder,
Kenneth Wha Eng,
Hiranmayi Ravichandran,
Duy Nguyen,
David Pisapia,
Aram Vosoughi,
Evan Fernandez,
Kyrillus S Shohdy,
Jyothi Manohar,
Shaham Beg,
David Wilkes,
Brian D Robinson,
Francesca Khani,
Rohan Bareja,
Scott T Tagawa,
Madhu M Ouseph,
Andrea Sboner,
Olivier Elemento,
Bishoy M Faltas,
Juan Miguel Mosquera.
Nat Commun. 2024 Mar 18;15(1):2009. doi: 10.1038/s41467-024-46320-w.
2024
Transcriptomic signatures of progressive and regressive liver fibrosis and portal hypertension
Oleksandr Petrenko,
Philipp Königshofer,
Ksenia Brusilovskaya,
Benedikt S Hofer,
Katharina Bareiner,
Benedikt Simbrunner,
Frank Jühling,
Thomas F Baumert,
Joachim Lupberger,
Michael Trauner,
Stefan G Kauschke,
Larissa Pfisterer,
Eric Simon,
André F Rendeiro,
Laura P M H de Rooij,
Philipp Schwabl,
Thomas Reiberger.
iScience. 2024 Feb 20;27(3):109301. doi: 10.1016/j.isci.2024.109301. eCollection 2024 Mar 15.
2024
Navigating the thymic landscape through development: from cellular atlas to tissue cartography
Dörte Symmank,
Felix Clemens Richter,
André F Rendeiro.
Genes Immun. 2024 Apr;25(2):102-104. doi: 10.1038/s41435-024-00257-8. Epub 2024 Feb 10.
2023
Mapping human natural killer cell development in pediatric tonsil by imaging mass cytometry and high-resolution microscopy
Everardo Hegewisch-Solloa,
Janine E Melsen,
Hiranmayi Ravichandran,
André F Rendeiro,
Aharon G Freud,
Bethany Mundy-Bosse,
Johannes C Melms,
Shira E Eisman,
Benjamin Izar,
Eli Grunstein,
Thomas J Connors,
Olivier Elemento,
Amir Horowitz,
Emily M Mace.
bioRxiv [Preprint]. 2023 Sep 6:2023.09.05.556371. doi: 10.1101/2023.09.05.556371.
2022
Spatial omics technologies at multimodal and single cell/subcellular level
Jiwoon Park,
Junbum Kim,
Tyler Lewy,
Charles M Rice,
Olivier Elemento,
André F Rendeiro,
Christopher E Mason.
Genome Biol. 2022 Dec 13;23(1):256. doi: 10.1186/s13059-022-02824-6.
