Publications
2026
Identification of the tendon/ligament stem cell in mice and humans
Lingling Hu,
Jun Sun,
Kyle W Morse,
Seoyeon Bok,
Yimin Zheng,
Un In Chan,
Han Choi,
Eugenie Macfarlane,
Alisha R Yallowitz,
Michelle Cung,
Ting Cong,
Peyton Lee Carpen,
Federico La Manna,
Shawon Debnath,
Haiyin Li,
Tim Xu,
Lipeng Wang,
Yangkang Zheng,
Takeshi Hirose,
Ryan N Serio,
Billy Lu,
Ryan J Chaffee,
Armin Scheben,
Ling J Zheng,
Jason McCormick,
Daniel Shinn,
Anthony Pajak,
Kasra Araghi,
Eric Zhao,
Anna Yemelyanova,
Chike Cao,
Geoffrey S Pitt,
Scott A Rodeo,
Dawid G Nowak,
Sravisht Iyer,
Matthew B Greenblatt.
Cell. 2026 Sep 7:S0092-8674(26)00945-1. doi: 10.1016/j.cell.2026.08.018. Online ahead of print.
2026
Histological aging signatures for monitoring tissue-specific aging and disease
Ernesto Abila,
Iva Buljan,
Yimin Zheng,
Lisa Kleissl,
Sigrid Klotz,
Tamas Veres,
Zhilong Weng,
Maja Nackenhorst,
Rizqah Kamies,
Anja Michl,
Safwen Kadri,
Samir Moustafa,
Wolfgang Hulla,
Matthias Perkonigg,
Mathias Drach,
Philipp Tschandl,
Barbara Sterniczky,
Matthias Heinig,
Laurens J De Sadeleer,
Wim Wuyts,
Bart Vanaudenaerde,
Laurens J Ceulemans,
Daniel D Buchanan,
Lochlan J Fennell,
Georg Stary,
Yuri Tolkach,
Adelheid Wöhrer,
Herbert B Schiller,
André F Rendeiro.
Nat Med. 2026 Sep;32(9):3466-3476. doi: 10.1038/s41591-026-04566-5. Epub 2026 Aug 14.
2026
Tumor Heterogeneity Induces Pro- and Anti-metastatic Myeloid Cell Phenotypes in Breast Cancer Lung Metastasis
Daphne A Superville,
Eva Chrenková,
Yimin Zheng,
Alexis J Combes,
Iros Barozzi,
Zena Werb,
André F Rendeiro,
Christopher S McGinnis,
Andrei Goga,
Juliane Winkler.
bioRxiv [Preprint]. 2026 Mar 27:2026.03.27.714678. doi: 10.64898/2026.03.27.714678.
2026
LazySlide: accessible and interoperable whole-slide image analysis
Yimin Zheng,
Ernesto Abila,
Eva Chrenková,
Iva Buljan,
Juliane Winkler,
André F Rendeiro.
Nat Methods. 2026 Apr;23(4):728-731. doi: 10.1038/s41592-026-03044-7. Epub 2026 Mar 20.
2025
The metabolic organ connectome: A novel approach to measure allostatic load during health-to-disease transition
Barbara Katharina Geist,
Julia Guthrie,
Hunor Kertesz,
Florian W Kiefer,
Oana C Kulterer,
Thomas Nakuz,
Lukas Nics,
Eva-Maria Patronas,
Andre Rendeiro,
Chrysoula Vraka,
Josef Yu,
Stefan Grünert,
Marcus Hacker.
Med. 2025 Dec 12;6(12):100881. doi: 10.1016/j.medj.2025.100881. Epub 2025 Oct 14.
2025
Systematic mapping of human tissue microanatomy reveals age-associated remodeling and resilience
Iva Buljan,
Zsuzsanna Bagó-Horváth,
André F. Rendeiro.
bioRxiv [Preprint]. 2025 Oct 14:2025.10.13.682110. doi: 110.1101/2025.10.13.682110.
2025
The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs
Jiwoon Park,
Roberto De Gregorio,
Erika Hissong,
Elif Ozcelik,
Nicholas Bartelo,
Felipe Segato Dezem,
Luke Zhang,
Maycon Marção,
Hannah Chasteen,
Yimin Zheng,
Ernesto Abila,
Junbum Kim,
Theodore Nelson,
Jacqueline Proszynski,
Akua A Agyemang,
Mohith Reddy Arikatla,
Arjumand Wani,
Yutian Liu,
Evelyn Metzger,
Stefan Rogers,
Prajan Divakar,
Parambir S Dulai,
Jason Reeves,
Yan Liang,
Liuliu Pan,
Sayani Bhattacharjee,
Michael Patrick,
Kimberly Young,
Ashley Heck,
Mithra Korukonda,
Dan McGuire,
Lidan Wu,
Aster Wardhani,
Joseph Beechem,
George Church,
Steven M Lipkin,
Aaron Berliner,
Sanjay Patel,
Fabio Socciarelli,
Jan Krumsiek,
Rohit Chandwani,
Sebastien Monette,
Brian Robinson,
Massimo Loda,
Olivier Elemento,
Luciano Martelotto,
Jasmine Plummer,
André F Rendeiro,
Alicia Alonso,
Robert E Schwartz,
Shauna Lee Houlihan,
Christopher E Mason.
bioRxiv [Preprint]. 2025 Nov 5:2025.06.16.658716. doi: 10.1101/2025.06.16.658716.
2025
LazySlide: accessible and interoperable whole slide image analysis
Yimin Zheng,
Ernesto Abila,
Eva Chrenková,
Juliane Winkler,
André F. Rendeiro.
bioRxiv [Preprint]. 2025 Jun 01:2025.05.28.656548. doi: 10.1101/2025.05.28.656548.
2025
Simultaneous immunomodulation and epithelial-to-mesenchymal transition drives lung adenocarcinoma progression
Junbum Kim,
Hiranmayi Ravichandran,
Liron Yoffe,
Bhavneet Bhinder,
Kyle Finos,
Arshdeep Singh,
Bradley B Pua,
Stewart Bates,
Bevan Emma Huang,
Andre F Rendeiro,
Vivek Mittal,
Nasser K Altorki,
Timothy E McGraw,
Olivier Elemento.
bioRxiv [Preprint]. 2025 Feb 22:2025.02.19.637138. doi: 10.1101/2025.02.19.637138.
2025
Marsilea: an intuitive generalized paradigm for composable visualizations
Yimin Zheng,
Zhihang Zheng,
André F Rendeiro,
Edwin Cheung.
Genome Biol. 2025 Jan 6;26(1):5. doi: 10.1186/s13059-024-03469-3.
