2024
Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023
Olga Frank,
David Acitores Balboa,
Maria Novatchkova,
Ezgi Özkan,
Marcus Martin Strobl,
Ramesh Yelagandula,
Tanino Guiseppe Albanese,
Lukas Endler,
Fabian Amman,
Vera Felsenstein,
Milanka Gavrilovic,
Melanie Acosta,
Timothej Patocka,
Alexander Vogt,
Ido Tamir,
Julia Klikovits,
Alexander Zoufaly,
Tamara Seitz,
Manuela Födinger,
Andreas Bergthaler,
Alexander Indra,
Daniela Schmid,
Peter Klimek,
Alexander Stark,
Franz Allerberger,
Bernhard Benka,
Katharina Reich,
Luisa Cochella,
Ulrich Elling.
Euro Surveill. 2024 Jun;29(23):2300542. doi: 10.2807/1560-7917.ES.2024.29.23.2300542.
2024
Breakthrough Infections in SARS-CoV-2-Vaccinated Multiple Myeloma Patients Improve Cross-Protection against Omicron Variants
Angelika Wagner,
Erika Garner-Spitzer,
Claudia Auer,
Pia Gattinger,
Ines Zwazl,
René Platzer,
Maria Orola-Taus,
Peter Pichler,
Fabian Amman,
Andreas Bergthaler,
Johannes B Huppa,
Hannes Stockinger,
Christoph C Zielinski,
Rudolf Valenta,
Michael Kundi,
Ursula Wiedermann.
Vaccines (Basel). 2024 May 9;12(5):518. doi: 10.3390/vaccines12050518.
2024
Oxidized phospholipids during microbial challenge: friend or foe?
Henrique G Colaço,
Kelsey Voss.
Genes Immun. 2024 Jun;25(3):177-178. doi: 10.1038/s41435-024-00273-8. Epub 2024 Apr 22.
2024
A call for accessible tools to unlock single-cell immunometabolism research
Jason Cosgrove,
Antoine Marçais,
Felix J Hartmann,
Andreas Bergthaler,
Ivan Zanoni,
Mauro Corrado,
Leïla Perié,
Nina Cabezas-Wallscheid,
Philippe Bousso,
Theodore Alexandrov,
Tammy Kielian,
Nuria Martínez-Martín,
Christiane A Opitz,
Costas A Lyssiotis,
Rafael J Argüello,
Jan Van den Bossche.
Nat Metab. 2024 May;6(5):779-782. doi: 10.1038/s42255-024-01031-w.
2024
Take my breath away-mitochondrial dysfunction drives CD8+ T cell exhaustion
Felix Clemens Richter,
Mariia Saliutina,
Ahmed N Hegazy,
Andreas Bergthaler.
Genes Immun. 2024 Feb;25(1):4-6. doi: 10.1038/s41435-023-00233-8. Epub 2024 Jan 22.
2023
A replicating LCMV-based vaccine for the treatment of solid tumors
Mette-Triin Purde,
Jovana Cupovic,
Yannick A Palmowski,
Ahmad Makky,
Sarah Schmidt,
Alexander Rochwarger,
Fabienne Hartmann,
Felix Stemeseder,
Alexander Lercher,
Marie-Therese Abdou,
David Bomze,
Lenka Besse,
Fiamma Berner,
Thomas Tüting,
Michael Hölzel,
Andreas Bergthaler,
Stefan Kochanek,
Burkhard Ludewig,
Henning Lauterbach,
Klaus K Orlinger,
Tobias Bald,
Andrea Schietinger,
Christian Schürch,
Sandra S Ring,
Lukas Flatz.
Mol Ther. 2024 Feb 7;32(2):426-439. doi: 10.1016/j.ymthe.2023.11.026. Epub 2023 Dec 5.
2023
Autoreactive T cells targeting type II pneumocyte antigens in COVID-19 convalescent patients
Christa Lichtensteiger,
Maximilian Koblischke,
Fiamma Berner,
Ann-Kristin Jochum,
Tobias Sinnberg,
Beatrice Balciunaite,
Mette-Triin Purde,
Vincent Walter,
Marie-Therese Abdou,
Kathrin Hofmeister,
Philipp Kohler,
Pietro Vernazza,
Werner C Albrich,
Christian R Kahlert,
Alexander Zoufaly,
Marianna T Traugott,
Lukas Kern,
Urs Pietsch,
Gian-Reto Kleger,
Miodrag Filipovic,
Manfred Kneilling,
Antonio Cozzio,
Oltin Pop,
David Bomze,
Andreas Bergthaler,
Omar Hasan Ali,
Judith Aberle,
Lukas Flatz.
J Autoimmun. 2023 Nov;140:103118. doi: 10.1016/j.jaut.2023.103118. Epub 2023 Oct 10.
2023
You only waste twice: T cells in parasite-induced organ wasting
Felix Clemens Richter,
Andreas Bergthaler.
Cell Rep. 2023 Aug 29;42(8):112829. doi: 10.1016/j.celrep.2023.112829. Epub 2023 Jul 24.
2023
WAVES (Web-based tool for Analysis and Visualization of Environmental Samples)-a web application for visualization of wastewater pathogen sequencing results
Petr Triska,
Fabian Amman,
Lukas Endler,
Andreas Bergthaler.
Bioinformatics. 2023 Apr 3;39(4):btad160. doi: 10.1093/bioinformatics/btad160.
2022
VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
Askar Gafurov,
Andrej Baláž,
Fabian Amman,
Kristína Boršová,
Viktória Čabanová,
Boris Klempa,
Andreas Bergthaler,
Tomáš Vinař,
Broňa Brejová.
BMC Bioinformatics. 2022 Dec 19;23(1):551. doi: 10.1186/s12859-022-05100-3.
