Publications
2015
Dissecting the role of aberrant DNA methylation in human leukaemia.
Amabile G,
Di Ruscio A,
Müller F,
Welner RS,
Yang H,
Ebralidze AK,
Zhang H,
Levantini E,
Qi L,
Martinelli G,
Brummelkamp T,
Le Beau MM,
Figueroa ME,
Bock C,
Tenen DG.
Nat Commun. 2015 May 22;6:7091. doi: 10.1038/ncomms8091.
2015
Allelome.PRO, a pipeline to define allele-specific genomic features from high-throughput sequencing data.
Andergassen D,
Dotter CP,
Kulinski TM,
Guenzl PM,
Bammer PC,
Barlow DP,
Pauler FM,
Hudson QJ.
Nucleic Acids Res. 2015 Dec 2;43(21):e146. doi: 10.1093/nar/gkv727. Epub 2015 Jul 21.
2015
Imprinted expression in cystic embryoid bodies shows an embryonic and not an extra-embryonic pattern.
Kulinski TM,
Casari MR,
Guenzl PM,
Wenzel D,
Andergassen D,
Hladik A,
Datlinger P,
Farlik M,
Theussl HC,
Penninger JM,
Knapp S,
Bock C,
Barlow DP,
Hudson QJ.
Dev Biol. 2015 Jun 15;402(2):291-305. doi: 10.1016/j.ydbio.2015.04.010. Epub 2015 Apr 24.
2014
Comprehensive analysis of DNA methylation data with RnBeads.
Assenov Y,
Müller F,
Lutsik P,
Walter J,
Lengauer T,
Bock C.
Nature Methods 11, 1138–1140 (2014) doi:10.1038/nmeth.3115.
2014
Regulation of DNA methylation patterns by CK2-mediated phosphorylation of Dnmt3a.
Deplus R,
Blanchon L,
Rajavelu A,
Boukaba A,
Defrance M,
Luciani J,
Rothé F,
Dedeurwaerder S,
Denis H,
Brinkman AB,
Simmer F,
Müller F,
Bertin B,
Berdasco M,
Putmans P,
Calonne E,
Litchfield DW,
de Launoit Y,
Jurkowski TP,
Stunnenberg HG,
Bock C,
Sotiriou C,
Fraga MF,
Esteller M,
Jeltsch A,
Fuks F.
Cell Rep. 2014 Aug 7;8(3):743-53. doi: 10.1016/j.celrep.2014.06.048. Epub 2014 Jul 24.
2014
Synergy and competition between cancer genome sequencing and epigenome mapping projects.
Bock C.
Genome Med. 2014 May 30;6(5):41. doi: 10.1186/gm557. eCollection 2014.
2014
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives.
Becker D,
Lutsik P,
Ebert P,
Bock C,
Lengauer T,
Walter J.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W501-7. doi: 10.1093/nar/gku457. Epub 2014 May 29.
2014
Promoter hypermethylation of the phosphatase DUSP22 mediates PKA-dependent TAU phosphorylation and CREB activation in Alzheimer's disease.
Sanchez-Mut JV,
Aso E,
Heyn H,
Matsuda T,
Bock C,
Ferrer I,
Esteller M.
Hippocampus. 2014 Apr;24(4):363-8. doi: 10.1002/hipo.22245. Epub 2014 Jan 28.
2014
Relationship between genome and epigenome--challenges and requirements for future research.
Almouzni G,
Altucci L,
Amati B,
Ashley N,
Baulcombe D,
Beaujean N,
Bock C,
Bongcam-Rudloff E,
Bousquet J,
Braun S,
Bressac-de Paillerets B,
Bussemakers M,
Clarke L,
Conesa A,
Estivill X,
Fazeli A,
Grgurević N,
Gut I,
Heijmans BT,
Hermouet S,
Houwing-Duistermaat J,
Iacobucci I,
Ilaš J,
Kandimalla R,
Krauss-Etschmann S,
Lasko P,
Lehmann S,
Lindroth A,
Majdič G,
Marcotte E,
Martinelli G,
Martinet N,
Meyer E,
Miceli C,
Mills K,
Moreno-Villanueva M,
Morvan G,
Nickel D,
Niesler B,
Nowacki M,
Nowak J,
Ossowski S,
Pelizzola M,
Pochet R,
Potočnik U,
Radwanska M,
Raes J,
Rattray M,
Robinson MD,
Roelen B,
Sauer S,
Schinzer D,
Slagboom E,
Spector T,
Stunnenberg HG,
Tiligada E,
Torres-Padilla ME,
Tsonaka R,
Van Soom A,
Vidaković M,
Widschwendter M.
BMC Genomics. 2014 Jun 18;15:487. doi: 10.1186/1471-2164-15-487.
2013
A reversible gene trap collection empowers haploid genetics in human cells.
Bürckstümmer T,
Banning C,
Hainzl P,
Schobesberger R,
Kerzendorfer C,
Pauler FM,
Chen D,
Them N,
Schischlik F,
Rebsamen M,
Smida M,
Fece de la Cruz F,
Lapao A,
Liszt M,
Eizinger B,
Guenzl PM,
Blomen VA,
Konopka T,
Gapp B,
Parapatics K,
Maier B,
Stöckl J,
Fischl W,
Salic S,
Taba Casari MR,
Knapp S,
Bennett KL,
Bock C,
Colinge J,
Kralovics R,
Ammerer G,
Casari G,
Brummelkamp TR,
Superti-Furga G,
Nijman SM.
Nat Methods. 2013 Oct;10(10):965-71.
