Publications
2021
Profiling biological perturbations with high-content imaging in single cells and heterogeneous populations.
Vulliard L,
Hancock J,
Kamnev A,
Fell CW,
Ferreira da Silva J,
Loizou JI,
Nagy V,
Dupré L,
Menche J.
jl: Profiling biological perturbations with high-content imaging in single cells and heterogeneous populations. Bioinformatics. 2021 Dec 22;38(6):1692-9. doi: 10.1093/bioinformatics/btab853. Online ahead of print.
2021
Discovering common pathogenetic processes between COVID-19 and diabetes mellitus by differential gene expression pattern analysis.
Rahman MR,
Islam T,
Shahjaman M,
Islam MR,
Lombardo SD,
Bramanti P,
Ciurleo R,
Bramanti A,
Tchorbanov A,
Fisicaro F,
Fagone P,
Nicoletti F,
Pennisi M.
Brief Bioinform. 2021 Nov 5;22(6):bbab262. doi: 10.1093/bib/bbab262.
2021
Morphological profiling of human T and NK lymphocytes by high-content cell imaging.
German Y,
Vulliard L,
Kamnev A,
Pfajfer L,
Huemer J,
Mautner AK,
Rubio A,
Kalinichenko A,
Boztug K,
Ferrand A,
Menche J,
Dupré L.
Cell Rep. 2021 Jul 6;36(1):109318. doi: 10.1016/j.celrep.2021.109318.
2021
Network analysis reveals rare disease signatures across multiple levels of biological organization.
Buphamalai P,
Kokotovic T,
Nagy V,
Menche J.
Nat Commun. 2021 Nov 9;12(1):6306. doi: 10.1038/s41467-021-26674-1.
2021
Network analysis reveals rare disease signatures across multiple levels of biological organization.
Buphamalai P,
Kokotovic T,
Nagy V,
Menche J.
Nat Commun. 2021 Nov 9;12(1):6306. doi: 10.1038/s41467-021-26674-1.
2021
The VRNetzer platform enables interactive network analysis in Virtual Reality.
Pirch S,
Müller F,
Iofinova E,
Pazmandi J,
Hütter CVR,
Chiettini M,
Sin C,
Boztug K,
Podkosova I,
Kaufmann H,
Menche J.
Nat Commun. 2021 Apr 23;12(1):2432. doi: 10.1038/s41467-021-22570-w.
2021
Hydrothermal polymerization of porous aromatic polyimide networks and machine learning-assisted computational morphology evolution interpretation.
Lahnsteiner M,
Caldera M,
Moura HM,
Cerrón-Infantes DA,
Roeser J,
Konegger T,
Thomas A,
Menche J,
Unterlass MM.
J Mater Chem A Mater. 2021 Sep 8;9(35):19754-19769. doi: 10.1039/d1ta01253c.
2021
Green Hydrothermal Synthesis of Fluorescent 2,3-Diarylquinoxalines and Large-Scale Computational Comparison to Existing Alternatives.
Amaya-García F,
Caldera M,
Koren A,
Kubicek S,
Menche J,
Unterlass MM.
ChemSusChem. 2021 Apr 22;14(8):1780. doi: 10.1002/cssc.202100607.
2021
The VRNetzer platform enables interactive network analysis in Virtual Reality.
Pirch S,
Müller F,
Iofinova E,
Pazmandi J,
Hütter CVR,
Chiettini M,
Sin C,
Boztug K,
Podkosova I,
Kaufmann H,
Menche J.
Nat Commun. 2021 Apr 23;12(1):2432. doi: 10.1038/s41467-021-22570-w.
2020
Transcriptional landscape of SARS-CoV-2 infection dismantles pathogenic pathways activated by the virus, proposes unique sex-specific differences and predicts tailored therapeutic strategies.
Fagone P,
Ciurleo R,
Lombardo SD,
Iacobello C,
Palermo CI,
Shoenfeld Y,
Bendtzen K,
Bramanti P,
Nicoletti F.
Autoimmun Rev. 2020 Jul;19(7):102571. doi: 10.1016/j.autrev.2020.102571. Epub 2020 May 3.
