Groups
Autoreactive T cells targeting type II pneumocyte antigens in COVID-19 convalescent patients
Christa Lichtensteiger, Maximilian Koblischke, Fiamma Berner, Ann-Kristin Jochum, Tobias Sinnberg, Beatrice Balciunaite, Mette-Triin Purde, Vincent Walter, Marie-Therese Abdou, Kathrin Hofmeister, Philipp Kohler, Pietro Vernazza, Werner C Albrich, Christian R Kahlert, Alexander Zoufaly, Marianna T Traugott, Lukas Kern, Urs Pietsch, Gian-Reto Kleger, Miodrag Filipovic, Manfred Kneilling, Antonio Cozzio, Oltin Pop, David Bomze, Andreas Bergthaler, Omar Hasan Ali, Judith Aberle, Lukas Flatz.J Autoimmun. 2023 Oct 10;140:103118. doi: 10.1016/j.jaut.2023.103118. Online ahead of print.
Abstract: https://pubmed.ncbi.nlm.nih.gov/37826919/
You only waste twice: T cells in parasite-induced organ wasting
Felix Clemens Richter, Andreas Bergthaler.Cell Rep. 2023 Aug 29;42(8):112829. doi: 10.1016/j.celrep.2023.112829. Epub 2023 Jul 24.
Abstract: https://pubmed.ncbi.nlm.nih.gov/37490906/
WAVES (Web-based tool for Analysis and Visualization of Environmental Samples)-a web application for visualization of wastewater pathogen sequencing results
Petr Triska, Fabian Amman, Lukas Endler, Andreas Bergthaler.Bioinformatics. 2023 Apr 3;39(4):btad160. doi: 10.1093/bioinformatics/btad160.
Abstract: https://pubmed.ncbi.nlm.nih.gov/37018136/
VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová.BMC Bioinformatics. 2022 Dec 19;23(1):551. doi: 10.1186/s12859-022-05100-3.
Abstract: https://pubmed.ncbi.nlm.nih.gov/36536300/
VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová.BMC Bioinformatics. 2022 Dec 19;23(1):551. doi: 10.1186/s12859-022-05100-3.
Abstract: https://pubmed.ncbi.nlm.nih.gov/36536300/
Comparison of clinical characteristics among patients infected with alpha vs. delta SARS-CoV-2 variants
Benedikt Rumpf, Benno Lickefett, Clemens Baumgartner, Victoria Kauer, Mario Karolyi, Erich Pawelka, Tamara Seitz, Marianna Traugott, Petr Triska, Andreas Bergthaler, Hermann Laferl, Christoph Wenisch, Alexander Zoufaly.Wien Klin Wochenschr. 2022 Dec;134(23-24):850-855. doi: 10.1007/s00508-022-02084-1. Epub 2022 Sep 7.
Abstract: https://pubmed.ncbi.nlm.nih.gov/36070027/
Comparison of clinical characteristics among patients infected with alpha vs. delta SARS-CoV-2 variants
Benedikt Rumpf, Benno Lickefett, Clemens Baumgartner, Victoria Kauer, Mario Karolyi, Erich Pawelka, Tamara Seitz, Marianna Traugott, Petr Triska, Andreas Bergthaler, Hermann Laferl, Christoph Wenisch, Alexander Zoufaly.Wien Klin Wochenschr. 2022 Sep 7:1-6. doi: 10.1007/s00508-022-02084-1. Online ahead of print.
Abstract: https://pubmed.ncbi.nlm.nih.gov/36070027/
Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale
Fabian Amman, Rudolf Markt, Lukas Endler, Sebastian Hupfauf, Benedikt Agerer, Anna Schedl, Lukas Richter, Melanie Zechmeister, Martin Bicher, Georg Heiler, Petr Triska, Matthew Thornton, Thomas Penz, Martin Senekowitsch, Jan Laine, Zsofia Keszei, Peter Klimek, Fabiana Nägele, Markus Mayr, Beatrice Daleiden, Martin Steinlechner, Harald Niederstätter, Petra Heidinger, Wolfgang Rauch, Christoph Scheffknecht, Gunther Vogl, Günther Weichlinger, Andreas Otto Wagner, Katarzyna Slipko, Amandine Masseron, Elena Radu, Franz Allerberger, Niki Popper, Christoph Bock, Daniela Schmid, Herbert Oberacher, Norbert Kreuzinger, Heribert Insam, Andreas Bergthaler.Nat Biotechnol. 2022 Dec;40(12):1814-1822. doi: 10.1038/s41587-022-01387-y. Epub 2022 Jul 18.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35851376/
Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale
Fabian Amman, Rudolf Markt, Lukas Endler, Sebastian Hupfauf, Benedikt Agerer, Anna Schedl, Lukas Richter, Melanie Zechmeister, Martin Bicher, Georg Heiler, Petr Triska, Matthew Thornton, Thomas Penz, Martin Senekowitsch, Jan Laine, Zsofia Keszei, Peter Klimek, Fabiana Nägele, Markus Mayr, Beatrice Daleiden, Martin Steinlechner, Harald Niederstätter, Petra Heidinger, Wolfgang Rauch, Christoph Scheffknecht, Gunther Vogl, Günther Weichlinger, Andreas Otto Wagner, Katarzyna Slipko, Amandine Masseron, Elena Radu, Franz Allerberger, Niki Popper, Christoph Bock, Daniela Schmid, Herbert Oberacher, Norbert Kreuzinger, Heribert Insam, Andreas Bergthaler.Nat Biotechnol. 2022 Jul 18. doi: 10.1038/s41587-022-01387-y. Online ahead of print.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35851376/
Macrophage mitochondrial bioenergetics and tissue invasion are boosted by an Atossa-Porthos axis in Drosophila
Shamsi Emtenani, Elliot T Martin, Attila Gyoergy, Julia Bicher, Jakob-Wendelin Genger, Thomas Köcher, Maria Akhmanova, Mariana Guarda, Marko Roblek, Andreas Bergthaler, Thomas R Hurd, Prashanth Rangan, Daria E Siekhaus.EMBO J. 2022 Jun 14;41(12):e109049. doi: 10.15252/embj.2021109049. Epub 2022 Mar 23.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35319107/
Macrophage mitochondrial bioenergetics and tissue invasion are boosted by an Atossa-Porthos axis in Drosophila
Shamsi Emtenani, Elliot T Martin, Attila Gyoergy, Julia Bicher, Jakob-Wendelin Genger, Thomas Köcher, Maria Akhmanova, Mariana Guarda, Marko Roblek, Andreas Bergthaler, Thomas R Hurd, Prashanth Rangan, Daria E Siekhaus.EMBO J. 2022 Jun 14;41(12):e109049. doi: 10.15252/embj.2021109049. Epub 2022 Mar 23.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35319107/
Emergence of SARS-CoV-2 Alpha lineage and its correlation with quantitative wastewater-based epidemiology data
Elena Radu, Amandine Masseron, Fabian Amman, Anna Schedl, Benedikt Agerer, Lukas Endler, Thomas Penz, Christoph Bock, Andreas Bergthaler, Julia Vierheilig, Peter Hufnagl, Irina Korschineck, Jörg Krampe, Norbert Kreuzinger.Water Res. 2022 May 15;215:118257. doi: 10.1016/j.watres.2022.118257. Epub 2022 Mar 6.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35303559/
Emergence of SARS-CoV-2 Alpha lineage and its correlation with quantitative wastewater-based epidemiology data
Elena Radu, Amandine Masseron, Fabian Amman, Anna Schedl, Benedikt Agerer, Lukas Endler, Thomas Penz, Christoph Bock, Andreas Bergthaler, Julia Vierheilig, Peter Hufnagl, Irina Korschineck, Jörg Krampe, Norbert Kreuzinger.Water Res. 2022 May 15;215:118257. doi: 10.1016/j.watres.2022.118257. Epub 2022 Mar 6.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35303559/
ACE2 is the critical in vivo receptor for SARS-CoV-2 in a novel COVID-19 mouse model with TNF- and IFNγ-driven immunopathology
Riem Gawish, Philipp Starkl, Lisabeth Pimenov, Anastasiya Hladik, Karin Lakovits, Felicitas Oberndorfer, Shane Jf Cronin, Anna Ohradanova-Repic, Gerald Wirnsberger, Benedikt Agerer, Lukas Endler, Tümay Capraz, Jan W Perthold, Domagoj Cikes, Rubina Koglgruber, Astrid Hagelkruys, Nuria Montserrat, Ali Mirazimi, Louis Boon, Hannes Stockinger, Andreas Bergthaler, Chris Oostenbrink, Josef M Penninger, Sylvia Knapp.Elife. 2022 Jan 13;11:e74623. doi: 10.7554/eLife.74623.
Abstract: https://pubmed.ncbi.nlm.nih.gov/35023830/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34187131/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34341034/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34705522/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34194424/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34237114/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34477520/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34242699/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34248938/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34608281/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33951468/
Abstract: https://pubmed.ncbi.nlm.nih.gov/34608281/ _blank
Abstract: https://pubmed.ncbi.nlm.nih.gov/34187131/ _blank
Abstract: https://pubmed.ncbi.nlm.nih.gov/33771589/ _blank
Abstract: https://pubmed.ncbi.nlm.nih.gov/32930709/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33664060/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33815354/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33771589/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33927339/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32483291/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32612232/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32664318/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32730780/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32730781/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32816114/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33131609/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33045014/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33199895/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33229462/
Abstract: https://pubmed.ncbi.nlm.nih.gov/33262325/
Abstract: https://pubmed.ncbi.nlm.nih.gov/31969567/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32023468/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32730781/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32794443/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32841338/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32997739/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32780801/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32930709/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32612232/
Abstract: https://pubmed.ncbi.nlm.nih.gov/32937151/
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/32023468
Abstract: https://pubmed.ncbi.nlm.nih.gov/31133695/
Abstract: https://pubmed.ncbi.nlm.nih.gov/31784108/
Abstract: https://pubmed.ncbi.nlm.nih.gov/31619583/
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/30645971
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/31133683
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/31275315
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/31110314.
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/29568378
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/29261807
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/28418389
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/28523522
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/28782508
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/28900132
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/29084568
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/27681624
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/27653692
Abstract: https://www.ncbi.nlm.nih.gov/pubmed/25419628
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/26587982
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/26588782
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/25567678
Abstract: http://www.cell.com/immunity/abstract/S1074-7613(15)00438-0
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/25419628
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/23999498
Abstract: http://www.ncbi.nlm.nih.gov/pubmed/22982991