Publications
2025
Simultaneous immunomodulation and epithelial-to-mesenchymal transition drives lung adenocarcinoma progression
Junbum Kim,
Hiranmayi Ravichandran,
Liron Yoffe,
Bhavneet Bhinder,
Kyle Finos,
Arshdeep Singh,
Bradley B Pua,
Stewart Bates,
Bevan Emma Huang,
Andre F Rendeiro,
Vivek Mittal,
Nasser K Altorki,
Timothy E McGraw,
Olivier Elemento.
bioRxiv [Preprint]. 2025 Feb 22:2025.02.19.637138. doi: 10.1101/2025.02.19.637138.
2025
Marsilea: an intuitive generalized paradigm for composable visualizations
Yimin Zheng,
Zhihang Zheng,
André F Rendeiro,
Edwin Cheung.
Genome Biol. 2025 Jan 6;26(1):5. doi: 10.1186/s13059-024-03469-3.
2024
Pooled multicolour tagging for visualizing subcellular protein dynamics
Andreas Reicher,
Jiří Reiniš,
Maria Ciobanu,
Pavel Růžička,
Monika Malik,
Marton Siklos,
Victoria Kartysh,
Tatjana Tomek,
Anna Koren,
André F Rendeiro,
Stefan Kubicek.
Nat Cell Biol. 2024 May;26(5):745-756. doi: 10.1038/s41556-024-01407-w. Epub 2024 Apr 19.
2024
The evolution of metastatic upper tract urothelial carcinoma through genomic-transcriptomic and single-cell protein markers analysis
Kentaro Ohara,
André Figueiredo Rendeiro,
Bhavneet Bhinder,
Kenneth Wha Eng,
Hiranmayi Ravichandran,
Duy Nguyen,
David Pisapia,
Aram Vosoughi,
Evan Fernandez,
Kyrillus S Shohdy,
Jyothi Manohar,
Shaham Beg,
David Wilkes,
Brian D Robinson,
Francesca Khani,
Rohan Bareja,
Scott T Tagawa,
Madhu M Ouseph,
Andrea Sboner,
Olivier Elemento,
Bishoy M Faltas,
Juan Miguel Mosquera.
Nat Commun. 2024 Mar 18;15(1):2009. doi: 10.1038/s41467-024-46320-w.
2024
Transcriptomic signatures of progressive and regressive liver fibrosis and portal hypertension
Oleksandr Petrenko,
Philipp Königshofer,
Ksenia Brusilovskaya,
Benedikt S Hofer,
Katharina Bareiner,
Benedikt Simbrunner,
Frank Jühling,
Thomas F Baumert,
Joachim Lupberger,
Michael Trauner,
Stefan G Kauschke,
Larissa Pfisterer,
Eric Simon,
André F Rendeiro,
Laura P M H de Rooij,
Philipp Schwabl,
Thomas Reiberger.
iScience. 2024 Feb 20;27(3):109301. doi: 10.1016/j.isci.2024.109301. eCollection 2024 Mar 15.
2024
Navigating the thymic landscape through development: from cellular atlas to tissue cartography
Dörte Symmank,
Felix Clemens Richter,
André F Rendeiro.
Genes Immun. 2024 Apr;25(2):102-104. doi: 10.1038/s41435-024-00257-8. Epub 2024 Feb 10.
2023
Mapping human natural killer cell development in pediatric tonsil by imaging mass cytometry and high-resolution microscopy
Everardo Hegewisch-Solloa,
Janine E Melsen,
Hiranmayi Ravichandran,
André F Rendeiro,
Aharon G Freud,
Bethany Mundy-Bosse,
Johannes C Melms,
Shira E Eisman,
Benjamin Izar,
Eli Grunstein,
Thomas J Connors,
Olivier Elemento,
Amir Horowitz,
Emily M Mace.
bioRxiv [Preprint]. 2023 Sep 6:2023.09.05.556371. doi: 10.1101/2023.09.05.556371.
2022
Spatial omics technologies at multimodal and single cell/subcellular level
Jiwoon Park,
Junbum Kim,
Tyler Lewy,
Charles M Rice,
Olivier Elemento,
André F Rendeiro,
Christopher E Mason.
Genome Biol. 2022 Dec 13;23(1):256. doi: 10.1186/s13059-022-02824-6.
2022
Persistent alveolar type 2 dysfunction and lung structural derangement in post-acute COVID-19
André F Rendeiro,
Hiranmayi Ravichandran,
Junbum Kim,
Alain C Borczuk,
Olivier Elemento,
Robert E Schwartz.
medRxiv. 2022 Nov 29:2022.11.28.22282811. doi: 10.1101/2022.11.28.22282811. Preprint.
2022
Author Correction: Unsupervised discovery of tissue architecture in multiplexed imaging
Junbum Kim,
Samir Rustam,
Juan Miguel Mosquera,
Scott H Randell,
Renat Shaykhiev,
André F Rendeiro,
Olivier Elemento.
Nat Methods. 2022 Dec;19(12):1662. doi: 10.1038/s41592-022-01717-7.
